Select a Metric:   Select a Category:

visitnoSeqs/Sample PD_whole_tree Ave.PD_whole_tree Err. chao1 Ave.chao1 Err. observed_species Ave.observed_species Err.
1200.0 4.106 1.696 33.372 19.729 23.007 11.992
1360.0 4.608 1.869 39.192 23.517 28.185 15.095
1520.0 4.926 1.974 43.130 25.925 31.710 17.202
1680.0 5.157 2.048 46.321 28.250 34.412 18.892
1840.0 5.336 2.113 48.561 29.973 36.611 20.324
11000.0 5.487 2.159 50.667 32.274 38.467 21.524
2200.0 4.225 1.683 35.236 21.280 23.721 12.553
2360.0 4.763 1.871 42.132 25.792 29.442 16.159
2520.0 5.108 1.987 46.479 28.635 33.350 18.664
2680.0 5.363 2.069 50.160 31.414 36.351 20.662
2840.0 5.558 2.138 52.707 33.395 38.786 22.268
21000.0 5.723 2.190 54.966 35.824 40.865 23.634
3200.0 3.509 0.689 25.100 4.345 18.200 3.501
3360.0 3.910 0.742 29.259 4.819 21.880 3.609
3520.0 4.262 0.771 34.487 5.850 24.900 4.201
3680.0 4.432 0.739 36.010 5.990 26.920 4.238
3840.0 4.624 0.741 38.188 8.179 28.720 4.634
31000.0 4.810 0.696 37.257 7.733 30.200 4.750
HMPbodysubsiteSeqs/Sample PD_whole_tree Ave.PD_whole_tree Err. chao1 Ave.chao1 Err. observed_species Ave.observed_species Err.
Anterior_nares200.0 3.133 1.191 26.998 14.345 16.724 8.352
Anterior_nares360.0 3.684 1.409 33.364 18.027 21.399 10.787
Anterior_nares520.0 4.059 1.483 37.327 20.762 24.831 12.393
Anterior_nares680.0 4.321 1.554 39.624 21.526 27.354 13.656
Anterior_nares840.0 4.521 1.633 41.237 21.644 29.498 14.756
Anterior_nares1000.0 4.697 1.679 42.301 22.741 31.345 15.635
Attached_Keratinized_gingiva200.0 3.333 0.819 22.488 9.130 16.506 5.778
Attached_Keratinized_gingiva360.0 3.686 0.910 27.017 10.946 19.833 7.075
Attached_Keratinized_gingiva520.0 3.938 0.965 30.111 11.900 22.239 7.919
Attached_Keratinized_gingiva680.0 4.116 1.011 32.339 12.857 24.019 8.616
Attached_Keratinized_gingiva840.0 4.263 1.038 34.474 13.552 25.536 9.039
Attached_Keratinized_gingiva1000.0 4.381 1.073 36.040 15.342 26.812 9.522
Buccal_mucosa200.0 4.105 1.020 34.477 11.960 22.604 7.287
Buccal_mucosa360.0 4.642 1.111 41.383 15.073 28.169 9.200
Buccal_mucosa520.0 5.019 1.187 45.092 16.103 32.147 10.531
Buccal_mucosa680.0 5.268 1.231 48.535 17.321 35.130 11.480
Buccal_mucosa840.0 5.487 1.273 50.557 17.777 37.629 12.256
Buccal_mucosa1000.0 5.656 1.306 52.361 18.669 39.669 12.886
Hard_palate200.0 4.906 0.912 37.660 10.965 25.799 6.292
Hard_palate360.0 5.499 0.996 43.784 12.678 31.703 7.818
Hard_palate520.0 5.861 1.060 48.150 15.334 35.608 9.065
Hard_palate680.0 6.121 1.119 51.681 16.835 38.701 10.040
Hard_palate840.0 6.316 1.162 54.812 19.237 41.094 10.940
Hard_palate1000.0 6.481 1.194 57.243 22.607 43.219 11.723
Left_Antecubital_fossa200.0 3.897 1.870 38.795 30.931 25.315 16.683
Left_Antecubital_fossa360.0 4.442 2.250 44.228 38.098 31.479 22.736
Left_Antecubital_fossa520.0 4.768 2.479 48.128 40.728 35.585 26.641
Left_Antecubital_fossa680.0 4.979 2.642 50.597 44.735 38.519 29.889
Left_Antecubital_fossa840.0 5.172 2.795 52.326 46.291 41.008 32.425
Left_Antecubital_fossa1000.0 5.317 2.914 54.967 50.130 43.077 34.658
Left_Retroauricular_crease200.0 2.525 1.247 21.268 16.772 13.262 8.680
Left_Retroauricular_crease360.0 3.019 1.490 27.100 20.947 17.168 11.448
Left_Retroauricular_crease520.0 3.336 1.616 30.907 22.840 20.046 13.536
Left_Retroauricular_crease680.0 3.567 1.730 32.636 24.514 22.119 15.015
Left_Retroauricular_crease840.0 3.747 1.835 34.523 26.653 23.913 16.542
Left_Retroauricular_crease1000.0 3.911 1.902 36.144 28.470 25.410 17.670
Mid_vagina200.0 1.651 0.800 7.864 4.837 5.990 3.210
Mid_vagina360.0 1.946 0.888 10.318 7.617 7.507 3.832
Mid_vagina520.0 2.127 0.962 11.598 7.622 8.516 4.391
Mid_vagina680.0 2.276 1.014 13.008 9.085 9.450 4.952
Mid_vagina840.0 2.389 1.062 13.708 9.700 10.152 5.420
Mid_vagina1000.0 2.487 1.095 14.063 10.114 10.756 5.771
Palatine_Tonsils200.0 5.605 0.975 42.289 11.579 29.724 7.496
Palatine_Tonsils360.0 6.247 1.054 48.925 12.909 36.080 9.218
Palatine_Tonsils520.0 6.649 1.104 54.246 14.260 40.399 10.263
Palatine_Tonsils680.0 6.935 1.135 58.045 15.720 43.630 11.085
Palatine_Tonsils840.0 7.163 1.176 61.736 18.121 46.357 11.803
Palatine_Tonsils1000.0 7.337 1.198 64.893 20.440 48.556 12.325
Posterior_fornix200.0 1.237 0.623 5.203 3.339 4.367 2.411
Posterior_fornix360.0 1.394 0.713 6.346 4.013 5.241 2.928
Posterior_fornix520.0 1.495 0.777 7.087 4.625 5.842 3.322
Posterior_fornix680.0 1.606 0.832 7.958 5.478 6.365 3.597
Posterior_fornix840.0 1.679 0.864 8.481 5.985 6.768 3.809
Posterior_fornix1000.0 1.748 0.907 9.051 6.710 7.139 4.056
Right_Antecubital_fossa200.0 3.847 1.883 35.121 29.912 24.213 17.232
Right_Antecubital_fossa360.0 4.327 2.241 41.254 37.468 29.913 23.221
Right_Antecubital_fossa520.0 4.662 2.510 45.433 40.958 33.881 27.407
Right_Antecubital_fossa680.0 4.905 2.707 49.317 44.865 36.806 30.574
Right_Antecubital_fossa840.0 5.081 2.862 50.665 46.001 39.102 33.109
Right_Antecubital_fossa1000.0 5.223 2.983 52.094 48.536 40.963 35.096
Right_Retroauricular_crease200.0 2.359 1.272 18.990 18.521 11.996 8.743
Right_Retroauricular_crease360.0 2.741 1.448 21.930 19.029 14.978 10.932
Right_Retroauricular_crease520.0 2.990 1.557 24.475 20.516 16.986 12.400
Right_Retroauricular_crease680.0 3.183 1.637 27.222 22.197 18.645 13.582
Right_Retroauricular_crease840.0 3.323 1.707 28.718 23.915 19.987 14.732
Right_Retroauricular_crease1000.0 3.476 1.773 30.496 25.689 21.247 15.623
Saliva200.0 5.912 0.864 49.882 14.064 34.557 7.847
Saliva360.0 6.549 1.027 58.019 17.436 42.544 10.578
Saliva520.0 6.913 1.133 63.526 20.086 47.683 12.351
Saliva680.0 7.183 1.219 67.495 22.759 51.410 13.816
Saliva840.0 7.384 1.298 70.122 25.338 54.497 15.191
Saliva1000.0 7.550 1.356 72.466 27.629 57.032 16.237
Stool200.0 4.296 0.965 62.225 23.791 34.582 11.815
Stool360.0 5.033 1.172 78.274 29.215 45.711 16.115
Stool520.0 5.541 1.308 88.068 32.749 53.855 19.196
Stool680.0 5.949 1.424 97.183 35.795 60.655 21.809
Stool840.0 6.255 1.515 103.856 38.348 66.182 23.792
Stool1000.0 6.538 1.585 109.524 42.689 71.084 25.544
Subgingival_plaque200.0 5.442 1.169 46.050 13.999 33.479 8.760
Subgingival_plaque360.0 6.040 1.299 52.064 15.023 40.339 11.113
Subgingival_plaque520.0 6.395 1.372 56.147 16.976 44.619 12.518
Subgingival_plaque680.0 6.641 1.421 60.474 18.080 47.922 13.536
Subgingival_plaque840.0 6.831 1.477 62.246 18.785 50.393 14.420
Subgingival_plaque1000.0 6.996 1.494 65.041 20.844 52.541 15.006
Supragingival_plaque200.0 4.697 1.116 39.129 12.632 29.360 8.434
Supragingival_plaque360.0 5.194 1.240 45.312 14.912 35.118 10.643
Supragingival_plaque520.0 5.506 1.330 49.120 16.326 38.819 11.970
Supragingival_plaque680.0 5.732 1.372 52.108 17.601 41.492 12.866
Supragingival_plaque840.0 5.893 1.418 54.486 19.562 43.625 13.719
Supragingival_plaque1000.0 6.027 1.448 56.496 21.677 45.427 14.358
Throat200.0 5.513 0.910 40.498 11.626 28.960 6.952
Throat360.0 6.127 1.042 47.016 14.541 35.037 9.049
Throat520.0 6.488 1.108 51.069 15.630 39.089 10.448
Throat680.0 6.760 1.150 55.051 18.009 42.174 11.609
Throat840.0 6.950 1.204 56.714 18.843 44.566 12.536
Throat1000.0 7.110 1.231 58.931 21.016 46.581 13.260
Tongue_dorsum200.0 4.931 0.752 30.063 6.876 22.667 4.411
Tongue_dorsum360.0 5.417 0.829 34.890 8.541 26.853 5.456
Tongue_dorsum520.0 5.733 0.868 38.077 9.166 29.688 6.042
Tongue_dorsum680.0 5.938 0.906 40.272 10.891 31.737 6.547
Tongue_dorsum840.0 6.112 0.921 41.944 11.339 33.485 7.037
Tongue_dorsum1000.0 6.240 0.934 43.084 12.641 34.846 7.371
Vaginal_introitus200.0 1.932 0.841 10.005 7.788 7.199 3.802
Vaginal_introitus360.0 2.246 0.928 12.510 8.415 9.053 4.775
Vaginal_introitus520.0 2.437 1.000 14.337 9.422 10.229 5.384
Vaginal_introitus680.0 2.612 1.055 15.708 11.236 11.305 6.053
Vaginal_introitus840.0 2.731 1.096 16.926 11.157 12.169 6.549
Vaginal_introitus1000.0 2.849 1.143 18.316 12.712 12.962 7.054
sexSeqs/Sample PD_whole_tree Ave.PD_whole_tree Err. chao1 Ave.chao1 Err. observed_species Ave.observed_species Err.
female200.0 3.865 1.830 31.250 21.313 21.336 13.068
female360.0 4.352 2.025 36.990 25.478 26.276 16.493
female520.0 4.668 2.142 40.838 27.849 29.680 18.827
female680.0 4.901 2.222 44.199 30.653 32.313 20.663
female840.0 5.080 2.291 46.300 32.440 34.438 22.187
female1000.0 5.231 2.344 48.295 34.884 36.232 23.451
male200.0 4.522 1.411 37.826 18.592 25.786 10.579
male360.0 5.078 1.562 44.791 22.587 31.787 13.700
male520.0 5.426 1.660 49.249 25.495 35.836 15.889
male680.0 5.679 1.736 52.695 27.723 38.914 17.701
male840.0 5.873 1.799 55.411 29.594 41.435 19.176
male1000.0 6.036 1.842 57.789 31.824 43.585 20.450